All functions

counts_obj

counts_obj

get_output_samples()

Get Output Samples from a Stan Fit Object

multipanel_theme

multipanel_theme

plot(<sccomp_tbl>)

plot

plot_1D_intervals()

Plot 1D Intervals for Cell-group Effects

plot_2D_intervals()

Plot 2D Intervals for Mean-Variance Association

plot_boxplot()

Plot Boxplot of Cell-group Proportion

plot_scatterplot()

Plot Scatterplot of Cell-group Proportion

sccomp_boxplot()

sccomp_boxplot

sccomp_calculate_residuals()

Calculate Residuals Between Observed and Predicted Proportions

sccomp_estimate()

Main Function for SCCOMP Estimate

sccomp_predict()

sccomp_predict

sccomp_proportional_fold_change()

Calculate Proportional Fold Change for sccomp Data

sccomp_remove_outliers()

sccomp_remove_outliers main

sccomp_remove_unwanted_variation()

sccomp_remove_unwanted_variation

sccomp_replicate()

sccomp_replicate

sccomp_test()

sccomp_test

sce_obj

sce_obj

seurat_obj

seurat_obj

simulate_data()

simulate_data