Package index
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clear_draw_files() - Clear Stan Draw Files
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clear_stan_model_cache() - Clear Stan Model Cache
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counts_obj - counts_obj
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handle_missing_values() - Handle missing values in a data frame
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no_significance_df - no_significance_df
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plot(<sccomp_tbl>) - plot
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plot_1D_intervals() - Plot 1D Intervals for Cell-group Effects
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plot_2D_intervals() - Plot 2D Intervals for Mean-Variance Association
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plot_scatterplot() - Plot Scatterplot of Cell-group Proportion
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print(<sccomp_tbl>) - Print method for sccomp objects
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sccomp_boxplot() - sccomp_boxplot
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sccomp_calculate_residuals() - Calculate Residuals Between Observed and Predicted Proportions
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sccomp_estimate() - Main Function for SCCOMP Estimate
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sccomp_predict() - sccomp_predict
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sccomp_proportional_fold_change() - Calculate Proportional Fold Change from sccomp Estimated Effects
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sccomp_remove_outliers() - sccomp_remove_outliers main
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sccomp_remove_unwanted_effects() - Remove unwanted effects from a sccomp_tbl object
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sccomp_remove_unwanted_variation() - DEPRECATED: Remove Unwanted Variation from sccomp Estimates
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sccomp_replicate() - sccomp_replicate
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sccomp_stan_models_cache_dir - Default cache directory for Stan models
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sccomp_test() - sccomp_test
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sccomp_theme() - Create a multipanel theme compatible with ggplot2 4.0.0 S7 system
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sce_obj - sce_obj
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seurat_obj - seurat_obj
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simulate_data() - simulate_data